ExpressionProfile class for OSP snapshot expression profiles

An R6 class that represents an expression profile in an OSP snapshot. This class provides methods to access different properties of an expression profile and display a summary of its information.

Active bindings

data: The raw data of the expression profile (read-only).
type: The type of the expression profile
species: The species of the expression profile
molecule: The molecule name of the expression profile
category: The category of the expression profile
localization: The localization of the expression profile
transportType: The transport type of the expression profile
ontogeny: The ontogeny information of the expression profile
parameters: The parameters of the expression profile
expression: The per-organ relative expression of the profile. Reading returns the raw ExpressionContainer[] list (or NULL when unset). Assigning accepts the same shapes as the expression argument of create_expression_profile() (a data frame of container rows, a raw list, or NULL/empty to clear it).
disease: The disease state of the profile. Reading returns the raw DiseaseState list (or NULL when unset). Assigning accepts the same shape as the disease argument of create_expression_profile() (a named list with name and optional parameters, or NULL to clear it).
id: The unique identifier of the expression profile

Methods

`ExpressionProfile$new()`

Create a new ExpressionProfile object

Usage

ExpressionProfile$new(data)

Arguments

data: Raw expression profile data from a snapshot

Returns

A new ExpressionProfile object

`ExpressionProfile$print()`

Print a summary of the expression profile

Usage

ExpressionProfile$print(...)

Arguments

...: Additional arguments passed to print methods

Returns

Invisibly returns the object

`ExpressionProfile$to_df()`

Convert the expression profile to data frames for easier manipulation

Usage

ExpressionProfile$to_df()

Returns

A list with basic information and parameters as tibbles

`ExpressionProfile$clone()`

The objects of this class are cloneable with this method.

Usage

ExpressionProfile$clone(deep = FALSE)

Arguments

deep: Whether to make a deep clone.