ExpressionProfile class for OSP snapshot expression profiles

An R6 class that represents an expression profile in an OSP snapshot. This class provides methods to access different properties of an expression profile and display a summary of its information.

Public fields

data

The raw data of the expression profile

Active bindings

type

The type of the expression profile

species

The species of the expression profile

molecule

The molecule name of the expression profile

category

The category of the expression profile

localization

The localization of the expression profile

transportType

The transport type of the expression profile

ontogeny

The ontogeny information of the expression profile

parameters

The parameters of the expression profile

id

The unique identifier of the expression profile

Methods

Public methods

• ExpressionProfile$new()

• ExpressionProfile$print()

• ExpressionProfile$to_df()

• ExpressionProfile$clone()

---

Method new()

Create a new ExpressionProfile object

Usage

ExpressionProfile$new(data)

Arguments

data

Raw expression profile data from a snapshot

Returns

A new ExpressionProfile object

---

Method print()

Print a summary of the expression profile

Usage

ExpressionProfile$print(...)

Arguments

...

Additional arguments passed to print methods

Returns

Invisibly returns the object

---

Method to_df()

Convert the expression profile to data frames for easier manipulation

Usage

ExpressionProfile$to_df()

Returns

A list with basic information and parameters as tibbles

---

Method clone()

The objects of this class are cloneable with this method.

Usage

ExpressionProfile$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.