Individual class for OSP snapshot individuals

An R6 class that represents an individual in an OSP snapshot. This class provides methods to access different properties of an individual and display a summary of its information.

Active bindings

data

The raw data of the individual (read-only)

name

The name of the individual

seed

The simulation seed for the individual

species

The species of the individual

population

The population of the individual

gender

The gender of the individual

age

The age value of the individual

age_unit

The age unit of the individual

weight

The weight value of the individual

weight_unit

The weight unit of the individual

height

The height value of the individual

height_unit

The height unit of the individual

gestational_age

The gestational age value of the individual

gestational_age_unit

The gestational age unit of the individual

disease_state

The disease state of the individual

disease_state_parameters

The disease state parameters of the individual

parameters

The list of parameter objects with a custom print method

calculation_methods

The calculation methods of the individual

expression_profiles

The expression profiles of the individual (read-only)

Methods

Public methods

• Individual$new()

• Individual$print()

• Individual$to_df()

• Individual$clone()

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Method new()

Create a new Individual object

Usage

Individual$new(data)

Arguments

data

Raw individual data from a snapshot

Returns

A new Individual object

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Method print()

Print a summary of the individual including its properties and parameters.

Usage

Individual$print(...)

Arguments

...

Additional arguments passed to print methods

Returns

Invisibly returns the Individual object for method chaining

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Method to_df()

Convert individual data to tibbles

Usage

Individual$to_df(type = "all")

Arguments

type

Character. Type of data to convert: "all" (default), "individuals", "individuals_parameters", or "individuals_expressions"

Returns

A list of tibbles containing the requested data

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Method clone()

The objects of this class are cloneable with this method.

Usage

Individual$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.