ProjectConfiguration

An object storing configuration used project-wide

Active bindings

projectConfigurationFilePath

Path to the file that serve as base path for other parameters. If NULL, then, other paths should be absolute paths.

projectConfigurationDirPath

Path to the folder that serve as base path for other paths. If NULL, then, other paths should be absolute paths.

modified

Logical indicating whether any configuration properties have been modified since loading from file. Read-only.

modelFolder

Path to the folder containing pkml simulation files.

configurationsFolder

Path to the folder containing excel files with model parameterization;

modelParamsFile

Name of the excel file with global model parameterization. Must be located in the "configurationsFolder".

individualsFile

Name of the excel file with individual-specific model parameterization. Must be located in the "configurationsFolder"

populationsFile

Name of the excel file with population information. Must be located in the "configurationsFolder".

populationsFolder

Name of the folder containing population defined through csv files Must be located in the "configurationsFolder".

scenariosFile

Name of the excel file with scenario definitions. Must be located in the "configurationsFolder".

applicationsFile

Name of the excel file scenario-specific parameters such as application protocol parameters. Must be located in the "configurationsFolder".

plotsFile

Name of the excel file with plot definitions. Must be located in the "configurationsFolder".

dataFolder

Path to the folder where experimental data files are located.

dataFile

Name of the excel file with experimental data. Must be located in the "dataFolder"

dataImporterConfigurationFile

Name of data importer configuration file in xml format used to load the data. Must be located in the "dataFolder"

outputFolder

Path to the folder where the results should be saved to; relative to the "Code" folder Initialize

Methods

Public methods

• ProjectConfiguration$new()

• ProjectConfiguration$print()

• ProjectConfiguration$save()

• ProjectConfiguration$clone()

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Method new()

Usage

ProjectConfiguration$new(projectConfigurationFilePath = character())

Arguments

projectConfigurationFilePath

A string representing the path to the project configuration file. Print

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Method print()

print prints a summary of the Project Configuration.

Usage

ProjectConfiguration$print(className = TRUE)

Arguments

className

Whether to print the name of the class at the beginning. default to TRUE.

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Method save()

Export ProjectConfiguration object to ProjectConfiguration.xlsx

Usage

ProjectConfiguration$save(path)

Arguments

path

a string representing the path or file name where to save the file. Can be absolute or relative (to working directory).

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Method clone()

The objects of this class are cloneable with this method.

Usage

ProjectConfiguration$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.