Run prediction simulations

Usage

runPredictions(
  studies,
  outputFolder,
  saveResults = TRUE,
  saveSimulation = FALSE,
  plotFigures = FALSE,
  numberOfCores = ospsuite::getOSPSuiteSetting("numberOfCores"),
  queueSize = 1000,
  outputSelections =
    c("Organism|PeripheralVenousBlood|**|Plasma*(Peripheral Venous Blood)"),
  simulationResolution = c(0, 10 * 24 * 60, 1/3)
)

Arguments

studies: list of study defined as Study objects
outputFolder: folder where the results will be saved (a subfolder called DateTime with DateTime being the run date and time will be created).
saveResults: Boolean. If TRUE, the simulations results will be saved as csv in a subfolder.
saveSimulation: Boolean. If TRUE, the fully parameterized simulation is stored as .pkml. Time consuming, mainly for debugging. Default is FALSE.
plotFigures: Boolean If TRUE, a plot will be created for each simulated study, showing all simulations results of the particular study. If observed data are available they will be shown on top. Default is FALSE.
numberOfCores: number of cores to use to run the simulations batches
queueSize: number of runs to queue before processing them
outputSelections: list of output selections to be used for all simulations (default is all compounds plasma concentration in the PeripheralVenousBlood compartement)
simulationResolution: vector of start time (min), end time (min) and resolution (pts/min) for all simulations